SRX084801
GSM765963: H3K36me3 plusRA

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
NTERA-2
Primary Tissue
Testis
Site of Extraction
lung
Tissue Diagnosis
Carcinoma, Embryonal

Attributes by original data submitter

Sample

source_name
Ntera2 cells
cell type
Ntera2
antibody
H3K36me3
vendor
Abcam (Cat. # ab9050)
treatment
with retinoic acid

Sequenced DNA Library

library_name
GSM765963: H3K36me3_plusRA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17884572
Reads aligned (%)
82.8
Duplicates removed (%)
2.2
Number of peaks
543 (qval < 1E-05)

hg19

Number of total reads
17884572
Reads aligned (%)
82.5
Duplicates removed (%)
2.8
Number of peaks
582 (qval < 1E-05)

Base call quality data from DBCLS SRA