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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K36me3
wikigenes
PDBj
CellType: NTERA-2
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX084800
GSM765962: H3K36me3 minusRA
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K36me3
Cell type
Cell type Class
Pluripotent stem cell
Cell type
NTERA-2
Primary Tissue
Testis
Site of Extraction
lung
Tissue Diagnosis
Carcinoma, Embryonal
Attributes by original data submitter
Sample
source_name
Ntera2 cells
cell type
Ntera2
antibody
H3K36me3
vendor
Abcam (Cat. # ab9050)
treatment
no retinoic acid
Sequenced DNA Library
library_name
GSM765962: H3K36me3_minusRA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
19507620
Reads aligned (%)
82.0
Duplicates removed (%)
2.2
Number of peaks
582 (qval < 1E-05)
hg19
Number of total reads
19507620
Reads aligned (%)
81.6
Duplicates removed (%)
2.7
Number of peaks
633 (qval < 1E-05)
Base call quality data from
DBCLS SRA