SRX084601
GSM763406: OCI-LY1 SMRT CHIP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NCOR2

Cell type

Cell type Class
Blood
Cell type
OCI-LY1
NA
NA

Attributes by original data submitter

Sample

source_name
Human DLBCL cell line
cell line
OCI-LY1
chip antibody
SMRT

Sequenced DNA Library

library_name
GSM763406: OCI-LY1_SMRT_CHIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
47587523
Reads aligned (%)
88.2
Duplicates removed (%)
29.4
Number of peaks
5138 (qval < 1E-05)

hg19

Number of total reads
47587523
Reads aligned (%)
87.3
Duplicates removed (%)
31.2
Number of peaks
5173 (qval < 1E-05)

Base call quality data from DBCLS SRA