SRX084583
GSM762834: input DNA

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Jurkat
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
Jurkat-Tat T cells
expression
HIV Tat protein
chip antibody
none
cell line
Jurkat

Sequenced DNA Library

library_name
GSM762834: input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
42249133
Reads aligned (%)
62.5
Duplicates removed (%)
5.2
Number of peaks
762 (qval < 1E-05)

hg19

Number of total reads
42249133
Reads aligned (%)
62.0
Duplicates removed (%)
6.4
Number of peaks
595 (qval < 1E-05)

Base call quality data from DBCLS SRA