SRX084526
GSM738822: RWPE1 GABPA

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GABPA

Cell type

Cell type Class
Prostate
Cell type
RWPE-1
Primary Tissue
Prostate
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
RWPE1_GABPA
cell line
RWPE-1
antibody
GABPA(Santa Cruz Biotechnology, cat# sc-22810, lot# B2009)
retroviral expression
None

Sequenced DNA Library

library_name
GSM738822: RWPE1 GABPA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
1900796
Reads aligned (%)
80.1
Duplicates removed (%)
34.8
Number of peaks
33 (qval < 1E-05)

hg38

Number of total reads
1900796
Reads aligned (%)
80.5
Duplicates removed (%)
34.4
Number of peaks
18 (qval < 1E-05)

Base call quality data from DBCLS SRA