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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: GABPA
wikigenes
PDBj
CellType: RWPE-1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX084526
GSM738822: RWPE1 GABPA
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
GABPA
Cell type
Cell type Class
Prostate
Cell type
RWPE-1
Primary Tissue
Prostate
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
RWPE1_GABPA
cell line
RWPE-1
antibody
GABPA(Santa Cruz Biotechnology, cat# sc-22810, lot# B2009)
retroviral expression
None
Sequenced DNA Library
library_name
GSM738822: RWPE1 GABPA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
1900796
Reads aligned (%)
80.5
Duplicates removed (%)
34.4
Number of peaks
18 (qval < 1E-05)
hg19
Number of total reads
1900796
Reads aligned (%)
80.1
Duplicates removed (%)
34.8
Number of peaks
33 (qval < 1E-05)
Base call quality data from
DBCLS SRA