SRX084522
GSM738818: PC3 JUND

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
JUND

Cell type

Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
PC3_JUND
cell line
PC3
antibody
JUND(Santa Cruz Biotechnology, cat# sc-74, lot# C0310)
retroviral expression
None

Sequenced DNA Library

library_name
GSM738818: PC3 JUND
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
6547659
Reads aligned (%)
97.6
Duplicates removed (%)
6.4
Number of peaks
2177 (qval < 1E-05)

hg19

Number of total reads
6547659
Reads aligned (%)
96.7
Duplicates removed (%)
7.6
Number of peaks
2272 (qval < 1E-05)

Base call quality data from DBCLS SRA