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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SMAD2
wikigenes
PDBj
CellType: hESC H9
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX084501
GSM761756: hESC D0 Smad XL rep2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SMAD2
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA
Attributes by original data submitter
Sample
source_name
Pluripotent hESC (H9)
cell type
H9 hESC
chip antibody
Smad2/3
chip antibody vendor
Santa Cruz Biotechnology Inc
Sequenced DNA Library
library_name
GSM761756: hESC_D0_Smad_XL_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
42947521
Reads aligned (%)
62.9
Duplicates removed (%)
25.0
Number of peaks
1185 (qval < 1E-05)
hg38
Number of total reads
42947521
Reads aligned (%)
64.6
Duplicates removed (%)
23.6
Number of peaks
921 (qval < 1E-05)
Base call quality data from
DBCLS SRA