SRX084501
GSM761756: hESC D0 Smad XL rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMAD2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
Pluripotent hESC (H9)
cell type
H9 hESC
chip antibody
Smad2/3
chip antibody vendor
Santa Cruz Biotechnology Inc

Sequenced DNA Library

library_name
GSM761756: hESC_D0_Smad_XL_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
42947521
Reads aligned (%)
62.9
Duplicates removed (%)
25.0
Number of peaks
1185 (qval < 1E-05)

hg38

Number of total reads
42947521
Reads aligned (%)
64.6
Duplicates removed (%)
23.6
Number of peaks
921 (qval < 1E-05)

Base call quality data from DBCLS SRA