Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Hindlimb
MeSH Description
Either of two extremities of four-footed non-primate land animals. It usually consists of a FEMUR; TIBIA; and FIBULA; tarsals; METATARSALS; and TOES. (From Storer et al., General Zoology, 6th ed, p73)

Attributes by original data submitter

Sample

source_name
embryonic hindlimb bud, ChIP input
strain
C57BL/6J
tissue
hindlimb bud
developmental stage
gestational day E10.5
chip antibody
none
sequencing run type
Single-end 75

Sequenced DNA Library

library_name
GSM759870: E10.5_hindlimb_ChIP_input_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
26345711
Reads aligned (%)
98.7
Duplicates removed (%)
13.2
Number of peaks
469 (qval < 1E-05)

mm9

Number of total reads
26345711
Reads aligned (%)
98.5
Duplicates removed (%)
13.2
Number of peaks
419 (qval < 1E-05)

Base call quality data from DBCLS SRA