SRX083259
GSM759858: E10.5 forelimb ChIP input rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Forelimb
MeSH Description
A front limb of a quadruped. (The Random House College Dictionary, 1980)

Attributes by original data submitter

Sample

source_name
embryonic forelimb bud, ChIP input
strain
C57BL/6J
tissue
forelimb bud
developmental stage
gestational day E10.5
chip antibody
none
sequencing run type
Single-end 75

Sequenced DNA Library

library_name
GSM759858: E10.5_forelimb_ChIP_input_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28841094
Reads aligned (%)
99.0
Duplicates removed (%)
16.7
Number of peaks
443 (qval < 1E-05)

mm9

Number of total reads
28841094
Reads aligned (%)
98.8
Duplicates removed (%)
16.8
Number of peaks
387 (qval < 1E-05)

Base call quality data from DBCLS SRA