Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR3C1

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
GR-siFoxA1_ChIP-seq
cell line
LNCaP-1F5
cell type
Prostate epithelial cells derived from metastatic prostate carcinoma
genotype/variation
genetically engineered to express rat glucocorticoid receptor (Cleutjens et al., 1997).
passages
15-35
chip antibody
GR

Sequenced DNA Library

library_name
GSM759670: GR-siFoxA1_ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
27412338
Reads aligned (%)
93.8
Duplicates removed (%)
4.0
Number of peaks
7796 (qval < 1E-05)

hg38

Number of total reads
27412338
Reads aligned (%)
96.0
Duplicates removed (%)
2.5
Number of peaks
7795 (qval < 1E-05)

Base call quality data from DBCLS SRA