Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Prostate

Cell type

LNCAP

Primary Tissue

Prostate

Tissue Diagnosis

Carcinoma

Sample

source_name

DHS-seq_siFoxA1

cell line

LNCaP-1F5

cell type

Prostate epithelial cells derived from metastatic prostate carcinoma

genotype/variation

genetically engineered to express rat glucocorticoid receptor (Cleutjens et al., 1997).

passages

15-35

Sequenced DNA Library

library_name

GSM759668: DHS-seq_siFoxA1

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

25196224

Reads aligned (%)

0.9

Duplicates removed (%)

27.8

Number of peaks

4 (qval < 1E-05)

hg19

Number of total reads

25196224

Reads aligned (%)

0.9

Duplicates removed (%)

28.0

Number of peaks

3 (qval < 1E-05)