SRX083222
GSM759663: FoxA1 ChIP-seq siFoxA1 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
FoxA1_ChIP-seq_siFoxA1
cell line
LNCaP-1F5
cell type
Prostate epithelial cells derived from metastatic prostate carcinoma
genotype/variation
genetically engineered to express rat glucocorticoid receptor (Cleutjens et al., 1997).
passages
15-35
chip antibody
FoxA1

Sequenced DNA Library

library_name
GSM759663: FoxA1_ChIP-seq_siFoxA1_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7661863
Reads aligned (%)
98.0
Duplicates removed (%)
2.1
Number of peaks
2239 (qval < 1E-05)

hg19

Number of total reads
7661863
Reads aligned (%)
97.1
Duplicates removed (%)
3.3
Number of peaks
2332 (qval < 1E-05)

Base call quality data from DBCLS SRA