Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
AR_ChIP-seq_siFoxA1
cell line
LNCaP-1F5
cell type
Prostate epithelial cells derived from metastatic prostate carcinoma
genotype/variation
genetically engineered to express rat glucocorticoid receptor (Cleutjens et al., 1997).
passages
15-35
chip antibody
AR

Sequenced DNA Library

library_name
GSM759660: AR_ChIP-seq_siFoxA1_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
20929289
Reads aligned (%)
92.3
Duplicates removed (%)
5.0
Number of peaks
11013 (qval < 1E-05)

hg38

Number of total reads
20929289
Reads aligned (%)
94.8
Duplicates removed (%)
3.3
Number of peaks
11002 (qval < 1E-05)

Base call quality data from DBCLS SRA