Antigen

Antigen Class

TFs and others

Antigen

AR

Cell type

Cell type Class

Prostate

Cell type

LNCAP

Primary Tissue

Prostate

Tissue Diagnosis

Carcinoma

Sample

source_name

AR_ChIP-seq_siFoxA1

cell line

LNCaP-1F5

cell type

Prostate epithelial cells derived from metastatic prostate carcinoma

genotype/variation

genetically engineered to express rat glucocorticoid receptor (Cleutjens et al., 1997).

passages

15-35

chip antibody

AR

Sequenced DNA Library

library_name

GSM759659: AR_ChIP-seq_siFoxA1_rep1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

21070403

Reads aligned (%)

97.9

Duplicates removed (%)

2.5

Number of peaks

10783 (qval < 1E-05)

hg19

Number of total reads

21070403

Reads aligned (%)

97.0

Duplicates removed (%)

4.0

Number of peaks

10768 (qval < 1E-05)