Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Tcf3

Cell type

Cell type Class
Blood
Cell type
Thymocytes
MeSH Description
HEMATOPOIETIC PROGENITOR CELLS that have migrated to the THYMUS where they differentiate into T-LYMPHOCYTES. Thymocytes are classified into maturational stages based on the expression of CELL SURFACE ANTIGENS.

Attributes by original data submitter

Sample

source_name
Rag2-/- thymocytes, anti-CD3e Ab injection, E2A ChIP
genetic background
C57BL/6 (Rag2-/-)
genotype
Rag2-/-
cell type
thymocyte
treatment
anti-CD3e Ab injection
treatment duration
2 days
chip antibody
anti-E2A
chip antibody vendor
Santa Cruz Biotechnology

Sequenced DNA Library

library_name
GSM756893: E2A, Day 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
20047815
Reads aligned (%)
56.6
Duplicates removed (%)
13.9
Number of peaks
1372 (qval < 1E-05)

mm9

Number of total reads
20047815
Reads aligned (%)
56.5
Duplicates removed (%)
14.1
Number of peaks
1444 (qval < 1E-05)

Base call quality data from DBCLS SRA