SRX080439
GSM749776: Stam HCPEpiC Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
HCPEpiC
Tissue
epithelium
Lineage
ectoderm
Description
choroid plexus epithelial cells

Attributes by original data submitter

Sample

source_name
HCPEpiC
biomaterial_provider
ScienCell
cell
HCPEpiC
cell organism
Human
cell description
Human Choroid Plexus Epithelial Cells
cell sex
U
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749776: Stam_HCPEpiC_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25437605
Reads aligned (%)
98.4
Duplicates removed (%)
2.1
Number of peaks
983 (qval < 1E-05)

hg19

Number of total reads
25437605
Reads aligned (%)
97.4
Duplicates removed (%)
3.5
Number of peaks
1073 (qval < 1E-05)

Base call quality data from DBCLS SRA