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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: HL-60
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX080438
GSM749775: Stam HL-60 Input 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia
Attributes by original data submitter
Sample
source_name
HL-60
biomaterial_provider
ATCC
cell
HL-60
cell organism
Human
cell description
Human promyelocytic leukemia cells. (PMID: 276884)
cell karyotype
cancer
cell sex
F
antibody
Input
replicate
1
Sequenced DNA Library
library_name
GSM749775: Stam_HL-60_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
17212375
Reads aligned (%)
97.2
Duplicates removed (%)
1.5
Number of peaks
658 (qval < 1E-05)
hg19
Number of total reads
17212375
Reads aligned (%)
96.4
Duplicates removed (%)
2.9
Number of peaks
1012 (qval < 1E-05)
Base call quality data from
DBCLS SRA