Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
HCT-116
biomaterial_provider
ATCC
cell
HCT-116
cell organism
Human
cell description
colorectal carcinoma (PMID: 7214343)
cell karyotype
cancer
cell lineage
endoderm
cell sex
M
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749774: Stam_HCT-116_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
25457596
Reads aligned (%)
98.3
Duplicates removed (%)
1.3
Number of peaks
620 (qval < 1E-05)

hg19

Number of total reads
25457596
Reads aligned (%)
97.4
Duplicates removed (%)
2.3
Number of peaks
868 (qval < 1E-05)

Base call quality data from DBCLS SRA