SRX080435
GSM749772: Stam AoAF Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
AoAF
Tissue
blood vessel
Lineage
mesoderm
Description
aortic adventitial fibroblast cells

Attributes by original data submitter

Sample

source_name
AoAF
biomaterial_provider
Lonza
cell
AoAF
cell organism
Human
cell description
aortic adventitial fibroblast cells
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749772: Stam_AoAF_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25668651
Reads aligned (%)
98.8
Duplicates removed (%)
1.7
Number of peaks
888 (qval < 1E-05)

hg19

Number of total reads
25668651
Reads aligned (%)
97.7
Duplicates removed (%)
3.2
Number of peaks
1026 (qval < 1E-05)

Base call quality data from DBCLS SRA