SRX080434
GSM749771: Stam HRPEpiC Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
HRPEpiC
Tissue
epithelium
Lineage
ectoderm
Description
retinal pigment epithelial cells

Attributes by original data submitter

Sample

source_name
HRPEpiC
biomaterial_provider
ScienCell
cell
HRPEpiC
cell organism
Human
cell description
Human Retinal Pigment Epithelial Cells
cell lineage
ectoderm
cell sex
U
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749771: Stam_HRPEpiC_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21966473
Reads aligned (%)
98.3
Duplicates removed (%)
1.6
Number of peaks
708 (qval < 1E-05)

hg19

Number of total reads
21966473
Reads aligned (%)
97.3
Duplicates removed (%)
2.9
Number of peaks
939 (qval < 1E-05)

Base call quality data from DBCLS SRA