SRX080433
GSM749770: Stam BJ Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Epidermis
Cell type
BJ
Primary Tissue
Skin
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
BJ
biomaterial_provider
ATCC
cell
BJ
cell organism
Human
cell description
skin fibroblast, "The line was established from skin taken from normal foreskin." - ATCC. (PMID: 9916803)
cell karyotype
normal
cell lineage
ectoderm
cell sex
M
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749770: Stam_BJ_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19662696
Reads aligned (%)
97.9
Duplicates removed (%)
2.5
Number of peaks
586 (qval < 1E-05)

hg19

Number of total reads
19662696
Reads aligned (%)
96.9
Duplicates removed (%)
4.3
Number of peaks
880 (qval < 1E-05)

Base call quality data from DBCLS SRA