Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HEK293
biomaterial_provider
ATCC
cell
HEK293
cell organism
Human
cell description
embryonic kidney. (PMID: 11967234)
cell karyotype
cancer
cell lineage
endoderm
cell sex
U
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749767: Stam_HEK293_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
17560427
Reads aligned (%)
90.6
Duplicates removed (%)
2.1
Number of peaks
431 (qval < 1E-05)

hg19

Number of total reads
17560427
Reads aligned (%)
89.9
Duplicates removed (%)
3.5
Number of peaks
695 (qval < 1E-05)

Base call quality data from DBCLS SRA