SRX080424
GSM749761: Stam HCFaa Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
HCFaa
Tissue
heart
Lineage
mesoderm
Description
cardiac fibroblasts- adult atrial

Attributes by original data submitter

Sample

source_name
HCFaa
biomaterial_provider
ScienCell
cell
HCFaa
cell organism
Human
cell description
Human Cardiac Fibroblasts-Adult Atrial
cell sex
F
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749761: Stam_HCFaa_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28947866
Reads aligned (%)
98.5
Duplicates removed (%)
2.0
Number of peaks
967 (qval < 1E-05)

hg19

Number of total reads
28947866
Reads aligned (%)
97.4
Duplicates removed (%)
3.5
Number of peaks
1091 (qval < 1E-05)

Base call quality data from DBCLS SRA