SRX080423
GSM749760: Stam MCF-7 Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7
biomaterial_provider
ATCC
cell
MCF-7
cell organism
Human
cell description
mammary gland, adenocarcinoma. (PMID: 4357757)
cell karyotype
cancer
cell sex
F
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749760: Stam_MCF-7_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32783914
Reads aligned (%)
99.2
Duplicates removed (%)
1.5
Number of peaks
669 (qval < 1E-05)

hg19

Number of total reads
32783914
Reads aligned (%)
98.3
Duplicates removed (%)
3.0
Number of peaks
1028 (qval < 1E-05)

Base call quality data from DBCLS SRA