Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Epidermis
Cell type
AG10803
Tissue
skin
Description
abdominal skin fibroblasts from apparently heathly 22 year old, "8% of the cells examined showing random chromosome loss, 2% showing random chromosome gain, and 2% showing 69,XYY" -Coriell

Attributes by original data submitter

Sample

source_name
AG10803
biomaterial_provider
AG10803
cell
AG10803
cell organism
Human
cell description
abdominal skin fibroblasts from apparently heathly 22 year old
cell karyotype
"8% of the cells examined showing random chromosome loss, 2% showing random chromosome gain, and 2% showing 69,XYY" -Coriell
cell lineage
mesoderm
cell sex
M
antibody
CTCF
antibody description
rabbit polyclonal
antibody target description
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name
Millipore
replicate
2

Sequenced DNA Library

library_name
GSM749759: Stam_AG10803_CTCF_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
34897505
Reads aligned (%)
83.4
Duplicates removed (%)
14.2
Number of peaks
44403 (qval < 1E-05)

hg38

Number of total reads
34897505
Reads aligned (%)
85.3
Duplicates removed (%)
13.0
Number of peaks
44477 (qval < 1E-05)

Base call quality data from DBCLS SRA