Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2
biomaterial_provider
ATCC
cell
HepG2
cell organism
Human
cell description
liver carcinoma
cell karyotype
cancer
cell lineage
endoderm
cell sex
M
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749756: Stam_HepG2_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
18282579
Reads aligned (%)
98.0
Duplicates removed (%)
1.5
Number of peaks
476 (qval < 1E-05)

hg19

Number of total reads
18282579
Reads aligned (%)
97.2
Duplicates removed (%)
2.8
Number of peaks
761 (qval < 1E-05)

Base call quality data from DBCLS SRA