SRX080418
GSM749755: Stam HMEC Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
HMEC
Primary Tissue
Breast
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HMEC
biomaterial_provider
Lonza
cell
HMEC
cell organism
Human
cell description
Human Mammary Epithelial Cells
cell sex
U
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749755: Stam_HMEC_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18473612
Reads aligned (%)
98.1
Duplicates removed (%)
2.0
Number of peaks
525 (qval < 1E-05)

hg19

Number of total reads
18473612
Reads aligned (%)
97.2
Duplicates removed (%)
3.5
Number of peaks
837 (qval < 1E-05)

Base call quality data from DBCLS SRA