Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Breast
Cell type
HMEC
Primary Tissue
Breast
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HMEC
biomaterial_provider
Lonza
cell
HMEC
cell organism
Human
cell description
Human Mammary Epithelial Cells
cell sex
U
antibody
CTCF
antibody description
rabbit polyclonal
antibody target description
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name
Millipore
replicate
1

Sequenced DNA Library

library_name
GSM749753: Stam_HMEC_CTCF_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
36258894
Reads aligned (%)
46.3
Duplicates removed (%)
17.4
Number of peaks
53584 (qval < 1E-05)

hg38

Number of total reads
36258894
Reads aligned (%)
46.9
Duplicates removed (%)
16.7
Number of peaks
53716 (qval < 1E-05)

Base call quality data from DBCLS SRA