Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Epidermis

Cell type

AG09309

Tissue

skin

Description

adult toe fibroblast from apparently healthy 21 year old, "7% of the cells examined showing random chromosome loss/gain" -Coriell

Sample

source_name

AG09309

biomaterial_provider

AG09309

cell

AG09309

cell organism

Human

cell description

adult toe fibroblast from apparently healthy 21 year old

cell karyotype

"7% of the cells examined showing random chromosome loss/gain" -Coriell

cell lineage

mesoderm

cell sex

F

antibody

CTCF

antibody description

rabbit polyclonal

antibody target description

CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

antibody vendor name

Millipore

replicate

1

Sequenced DNA Library

library_name

GSM749750: Stam_AG09309_CTCF_1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

17350883

Reads aligned (%)

96.4

Duplicates removed (%)

11.4

Number of peaks

39375 (qval < 1E-05)

hg19

Number of total reads

17350883

Reads aligned (%)

95.8

Duplicates removed (%)

12.3

Number of peaks

39383 (qval < 1E-05)