Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Epidermis
Cell type
AG09309
Tissue
skin
Description
adult toe fibroblast from apparently healthy 21 year old, "7% of the cells examined showing random chromosome loss/gain" -Coriell

Attributes by original data submitter

Sample

source_name
AG09309
biomaterial_provider
AG09309
cell
AG09309
cell organism
Human
cell description
adult toe fibroblast from apparently healthy 21 year old
cell karyotype
"7% of the cells examined showing random chromosome loss/gain" -Coriell
cell lineage
mesoderm
cell sex
F
antibody
CTCF
antibody description
rabbit polyclonal
antibody target description
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name
Millipore
replicate
1

Sequenced DNA Library

library_name
GSM749750: Stam_AG09309_CTCF_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
17350883
Reads aligned (%)
84.0
Duplicates removed (%)
12.3
Number of peaks
39383 (qval < 1E-05)

hg38

Number of total reads
17350883
Reads aligned (%)
85.4
Duplicates removed (%)
11.4
Number of peaks
39375 (qval < 1E-05)

Base call quality data from DBCLS SRA