Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Digestive tract
Cell type
Caco-2
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Caco-2
biomaterial_provider
ATCC
cell
Caco-2
cell organism
Human
cell description
colorectal adenocarcinoma. (PMID: 1939345)
cell karyotype
cancer
cell lineage
endoderm
cell sex
M
antibody
CTCF
antibody description
rabbit polyclonal
antibody target description
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name
Millipore
replicate
1

Sequenced DNA Library

library_name
GSM749748: Stam_Caco-2_CTCF_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
31351963
Reads aligned (%)
36.0
Duplicates removed (%)
44.0
Number of peaks
39174 (qval < 1E-05)

hg38

Number of total reads
31351963
Reads aligned (%)
37.0
Duplicates removed (%)
42.8
Number of peaks
38293 (qval < 1E-05)

Base call quality data from DBCLS SRA