Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Digestive tract

Cell type

Caco-2

Primary Tissue

Colon

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

Caco-2

biomaterial_provider

ATCC

cell

Caco-2

cell organism

Human

cell description

colorectal adenocarcinoma. (PMID: 1939345)

cell karyotype

cancer

cell lineage

endoderm

cell sex

M

antibody

CTCF

antibody description

rabbit polyclonal

antibody target description

CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

antibody vendor name

Millipore

replicate

1

Sequenced DNA Library

library_name

GSM749748: Stam_Caco-2_CTCF_1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

31351963

Reads aligned (%)

64.7

Duplicates removed (%)

42.8

Number of peaks

38293 (qval < 1E-05)

hg19

Number of total reads

31351963

Reads aligned (%)

64.2

Duplicates removed (%)

44.0

Number of peaks

39174 (qval < 1E-05)