SRX080409
GSM749746: Stam HBMEC Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
HBMEC
Tissue
blood vessel
Lineage
mesoderm
Description
brain microvascular endothelial cells

Attributes by original data submitter

Sample

source_name
HBMEC
biomaterial_provider
ScienCell
cell
HBMEC
cell organism
Human
cell description
Human Brain Microvascular Endothelial Cells
cell sex
U
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749746: Stam_HBMEC_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25025690
Reads aligned (%)
98.8
Duplicates removed (%)
1.6
Number of peaks
618 (qval < 1E-05)

hg19

Number of total reads
25025690
Reads aligned (%)
97.6
Duplicates removed (%)
2.7
Number of peaks
929 (qval < 1E-05)

Base call quality data from DBCLS SRA