SRX080406
GSM749743: Stam HBMEC CTCF 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Cardiovascular
Cell type
HBMEC
Tissue
blood vessel
Lineage
mesoderm
Description
brain microvascular endothelial cells

Attributes by original data submitter

Sample

source_name
HBMEC
biomaterial_provider
ScienCell
cell
HBMEC
cell organism
Human
cell description
Human Brain Microvascular Endothelial Cells
cell sex
U
antibody
CTCF
antibody description
rabbit polyclonal
antibody target description
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name
Millipore
replicate
1

Sequenced DNA Library

library_name
GSM749743: Stam_HBMEC_CTCF_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28131144
Reads aligned (%)
95.6
Duplicates removed (%)
24.5
Number of peaks
57623 (qval < 1E-05)

hg19

Number of total reads
28131144
Reads aligned (%)
95.2
Duplicates removed (%)
25.0
Number of peaks
57492 (qval < 1E-05)

Base call quality data from DBCLS SRA