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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: HCM
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX080401
GSM749738: Stam HCM Input 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Cardiovascular
Cell type
HCM
Tissue
heart
Lineage
mesoderm
Description
cardiac myocytes
Attributes by original data submitter
Sample
source_name
HCM
biomaterial_provider
ScienCell
cell
HCM
cell organism
Human
cell description
Human Cardiac Myocytes
cell lineage
mesoderm
cell sex
U
antibody
Input
replicate
1
Sequenced DNA Library
library_name
GSM749738: Stam_HCM_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
28132208
Reads aligned (%)
98.5
Duplicates removed (%)
2.2
Number of peaks
936 (qval < 1E-05)
hg19
Number of total reads
28132208
Reads aligned (%)
97.4
Duplicates removed (%)
3.8
Number of peaks
1145 (qval < 1E-05)
Base call quality data from
DBCLS SRA