Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Others
Cell type
AG09319
Tissue
gingival
Description
gum tissue fibroblasts from apparently heathly 24 year old

Attributes by original data submitter

Sample

source_name
AG09319
biomaterial_provider
AG09319
cell
AG09319
cell organism
Human
cell description
gum tissue fibroblasts from apparently heathly 24 year old
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
antibody
CTCF
antibody description
rabbit polyclonal
antibody target description
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name
Millipore
replicate
1

Sequenced DNA Library

library_name
GSM749728: Stam_AG09319_CTCF_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
27020511
Reads aligned (%)
95.4
Duplicates removed (%)
20.5
Number of peaks
45103 (qval < 1E-05)

hg19

Number of total reads
27020511
Reads aligned (%)
94.8
Duplicates removed (%)
21.3
Number of peaks
45077 (qval < 1E-05)

Base call quality data from DBCLS SRA