Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Kidney
Cell type
HRE
Tissue
epithelium
Lineage
mesoderm
Description
renal epithelial cells

Attributes by original data submitter

Sample

source_name
HRE
biomaterial_provider
Lonza
cell
HRE
cell organism
Human
cell description
Human Renal Epithelial cells (normal)
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
antibody
CTCF
antibody description
rabbit polyclonal
antibody target description
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name
Millipore
replicate
1

Sequenced DNA Library

library_name
GSM749727: Stam_HRE_CTCF_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
15179497
Reads aligned (%)
46.3
Duplicates removed (%)
32.4
Number of peaks
40284 (qval < 1E-05)

hg38

Number of total reads
15179497
Reads aligned (%)
46.9
Duplicates removed (%)
31.8
Number of peaks
40413 (qval < 1E-05)

Base call quality data from DBCLS SRA