Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Epidermis
Cell type
NHDF
Primary Tissue
Skin
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
NHDF-neo
biomaterial_provider
Lonza
cell
NHDF-neo
cell organism
Human
cell description
Neonatal Human Dermal Fibroblasts
cell lineage
mesoderm
cell sex
U
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749722: Stam_NHDF-neo_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
33874487
Reads aligned (%)
98.8
Duplicates removed (%)
2.0
Number of peaks
961 (qval < 1E-05)

hg19

Number of total reads
33874487
Reads aligned (%)
97.7
Duplicates removed (%)
3.5
Number of peaks
1169 (qval < 1E-05)

Base call quality data from DBCLS SRA