SRX080384
GSM749721: Stam HeLa-S3 Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
cell
HeLa-S3
cell organism
Human
cell description
cervical carcinoma
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749721: Stam_HeLa-S3_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18602597
Reads aligned (%)
98.0
Duplicates removed (%)
1.7
Number of peaks
436 (qval < 1E-05)

hg19

Number of total reads
18602597
Reads aligned (%)
97.2
Duplicates removed (%)
3.1
Number of peaks
705 (qval < 1E-05)

Base call quality data from DBCLS SRA