SRX080382
GSM749719: Stam K562 Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
cell
K562
cell organism
Human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749719: Stam_K562_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18123856
Reads aligned (%)
98.4
Duplicates removed (%)
1.1
Number of peaks
440 (qval < 1E-05)

hg19

Number of total reads
18123856
Reads aligned (%)
97.6
Duplicates removed (%)
2.6
Number of peaks
772 (qval < 1E-05)

Base call quality data from DBCLS SRA