SRX080379
GSM749716: Stam NB4 Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NB4
biomaterial_provider
Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 http://www.dsmz.de/ or Yale (Stanford): National Cell Culture Center http://www.nccc.com/
cell
NB4
cell organism
Human
cell description
acute promyelocytic leukemia cell line. (PMID: 1995093)
cell karyotype
cancer
cell sex
U
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749716: Stam_NB4_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32176838
Reads aligned (%)
98.8
Duplicates removed (%)
1.7
Number of peaks
1043 (qval < 1E-05)

hg19

Number of total reads
32176838
Reads aligned (%)
97.8
Duplicates removed (%)
3.1
Number of peaks
1142 (qval < 1E-05)

Base call quality data from DBCLS SRA