SRX080378
GSM749715: Stam HepG2 CTCF 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2
biomaterial_provider
ATCC
cell
HepG2
cell organism
Human
cell description
liver carcinoma
cell karyotype
cancer
cell lineage
endoderm
cell sex
M
antibody
CTCF
antibody description
rabbit polyclonal
antibody target description
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name
Millipore
replicate
1

Sequenced DNA Library

library_name
GSM749715: Stam_HepG2_CTCF_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23416645
Reads aligned (%)
58.8
Duplicates removed (%)
10.2
Number of peaks
51586 (qval < 1E-05)

hg19

Number of total reads
23416645
Reads aligned (%)
58.5
Duplicates removed (%)
10.8
Number of peaks
51441 (qval < 1E-05)

Base call quality data from DBCLS SRA