SRX080376
GSM749713: Stam HCF Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
HCF
Tissue
heart
Lineage
mesoderm
Description
cardiac fibroblasts

Attributes by original data submitter

Sample

source_name
HCF
biomaterial_provider
ScienCell
cell
HCF
cell organism
Human
cell description
Human Cardiac Fibroblasts
cell lineage
mesoderm
cell sex
U
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749713: Stam_HCF_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32717489
Reads aligned (%)
98.8
Duplicates removed (%)
2.4
Number of peaks
1178 (qval < 1E-05)

hg19

Number of total reads
32717489
Reads aligned (%)
97.7
Duplicates removed (%)
4.0
Number of peaks
1253 (qval < 1E-05)

Base call quality data from DBCLS SRA