SRX080375
GSM749712: Stam HEEpiC CTCF 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Digestive tract
Cell type
HEEpiC
Tissue
epithelium
Lineage
endoderm
Description
esophageal epithelial cells

Attributes by original data submitter

Sample

source_name
HEEpiC
biomaterial_provider
ScienCell
cell
HEEpiC
cell organism
Human
cell description
Human Esophageal Epithelial Cells
cell lineage
endoderm
cell sex
U
antibody
CTCF
antibody description
rabbit polyclonal
antibody target description
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name
Millipore
replicate
1

Sequenced DNA Library

library_name
GSM749712: Stam_HEEpiC_CTCF_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28024999
Reads aligned (%)
97.2
Duplicates removed (%)
12.2
Number of peaks
41931 (qval < 1E-05)

hg19

Number of total reads
28024999
Reads aligned (%)
96.6
Duplicates removed (%)
13.1
Number of peaks
41872 (qval < 1E-05)

Base call quality data from DBCLS SRA