SRX080365
GSM749702: Stam AG04449 Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Epidermis
Cell type
AG04449
Tissue
skin
Description
fetal buttock/thigh fibroblast

Attributes by original data submitter

Sample

source_name
AG04449
biomaterial_provider
AG04449
cell
AG04449
cell organism
Human
cell description
fetal buttock/thigh fibroblast
cell karyotype
normal
cell sex
M
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749702: Stam_AG04449_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19802273
Reads aligned (%)
97.5
Duplicates removed (%)
1.7
Number of peaks
627 (qval < 1E-05)

hg19

Number of total reads
19802273
Reads aligned (%)
96.2
Duplicates removed (%)
3.0
Number of peaks
789 (qval < 1E-05)

Base call quality data from DBCLS SRA