SRX080361
GSM749698: Stam HEEpiC Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
HEEpiC
Tissue
epithelium
Lineage
endoderm
Description
esophageal epithelial cells

Attributes by original data submitter

Sample

source_name
HEEpiC
biomaterial_provider
ScienCell
cell
HEEpiC
cell organism
Human
cell description
Human Esophageal Epithelial Cells
cell lineage
endoderm
cell sex
U
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749698: Stam_HEEpiC_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16676214
Reads aligned (%)
91.7
Duplicates removed (%)
2.5
Number of peaks
1123 (qval < 1E-05)

hg19

Number of total reads
16676214
Reads aligned (%)
90.6
Duplicates removed (%)
3.5
Number of peaks
1349 (qval < 1E-05)

Base call quality data from DBCLS SRA