SRX080360
GSM749697: Stam AG04450 Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
AG04450
Tissue
lung
Lineage
endoderm
Description
fetal lung fibroblast

Attributes by original data submitter

Sample

source_name
AG04450
biomaterial_provider
AG04450
cell
AG04450
cell organism
Human
cell description
fetal lung fibroblast
cell karyotype
normal
cell lineage
mesoderm
cell sex
M
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749697: Stam_AG04450_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22485486
Reads aligned (%)
97.9
Duplicates removed (%)
1.8
Number of peaks
701 (qval < 1E-05)

hg19

Number of total reads
22485486
Reads aligned (%)
96.7
Duplicates removed (%)
3.1
Number of peaks
855 (qval < 1E-05)

Base call quality data from DBCLS SRA