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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CTCF
wikigenes
PDBj
CellType: HA-sp
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX080359
GSM749696: Stam HA-sp CTCF 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CTCF
Cell type
Cell type Class
Neural
Cell type
HA-sp
Tissue
spinal cord
Lineage
ectoderm
Description
astrocytes spinal cord
Attributes by original data submitter
Sample
source_name
HA-sp
biomaterial_provider
ScienCell
cell
HA-sp
cell organism
Human
cell description
Human astrocytes spinal cord
cell karyotype
normal
cell lineage
Astrocytic
cell sex
U
antibody
CTCF
antibody description
rabbit polyclonal
antibody target description
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name
Millipore
replicate
1
Sequenced DNA Library
library_name
GSM749696: Stam_HA-sp_CTCF_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
18451799
Reads aligned (%)
95.0
Duplicates removed (%)
11.3
Number of peaks
41152 (qval < 1E-05)
hg19
Number of total reads
18451799
Reads aligned (%)
94.3
Duplicates removed (%)
12.2
Number of peaks
41098 (qval < 1E-05)
Base call quality data from
DBCLS SRA