Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Neural
Cell type
HA-sp
Tissue
spinal cord
Lineage
ectoderm
Description
astrocytes spinal cord

Attributes by original data submitter

Sample

source_name
HA-sp
biomaterial_provider
ScienCell
cell
HA-sp
cell organism
Human
cell description
Human astrocytes spinal cord
cell karyotype
normal
cell lineage
Astrocytic
cell sex
U
antibody
CTCF
antibody description
rabbit polyclonal
antibody target description
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name
Millipore
replicate
1

Sequenced DNA Library

library_name
GSM749696: Stam_HA-sp_CTCF_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
18451799
Reads aligned (%)
82.8
Duplicates removed (%)
12.2
Number of peaks
41098 (qval < 1E-05)

hg38

Number of total reads
18451799
Reads aligned (%)
84.2
Duplicates removed (%)
11.3
Number of peaks
41152 (qval < 1E-05)

Base call quality data from DBCLS SRA