SRX080358
GSM749695: Stam AG04449 CTCF 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Epidermis
Cell type
AG04449
Tissue
skin
Description
fetal buttock/thigh fibroblast

Attributes by original data submitter

Sample

source_name
AG04449
biomaterial_provider
AG04449
cell
AG04449
cell organism
Human
cell description
fetal buttock/thigh fibroblast
cell karyotype
normal
cell sex
M
antibody
CTCF
antibody description
rabbit polyclonal
antibody target description
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name
Millipore
replicate
1

Sequenced DNA Library

library_name
GSM749695: Stam_AG04449_CTCF_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11536775
Reads aligned (%)
97.5
Duplicates removed (%)
19.5
Number of peaks
45507 (qval < 1E-05)

hg19

Number of total reads
11536775
Reads aligned (%)
97.1
Duplicates removed (%)
19.9
Number of peaks
45467 (qval < 1E-05)

Base call quality data from DBCLS SRA