Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Blood

Cell type

HL-60

Primary Tissue

Blood

Tissue Diagnosis

Leukemia

Sample

source_name

HL-60

biomaterial_provider

ATCC

cell

HL-60

cell organism

Human

cell description

Human promyelocytic leukemia cells. (PMID: 276884)

cell karyotype

cancer

cell sex

F

antibody

CTCF

antibody description

rabbit polyclonal

antibody target description

CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

antibody vendor name

Millipore

replicate

1

Sequenced DNA Library

library_name

GSM749688: Stam_HL-60_CTCF_1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg19

Number of total reads

18165721

Reads aligned (%)

53.5

Duplicates removed (%)

3.6

Number of peaks

28916 (qval < 1E-05)

hg38

Number of total reads

18165721

Reads aligned (%)

54.5

Duplicates removed (%)

2.9

Number of peaks

28573 (qval < 1E-05)