Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
GM12873
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed

Attributes by original data submitter

Sample

source_name
GM12873
biomaterial_provider
GM12873
cell
GM12873
cell organism
Human
cell description
B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, Treatment: Epstein-Barr Virus transformed
cell karyotype
unknown
cell lineage
mesoderm
cell sex
F
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749685: Stam_GM12873_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
18665280
Reads aligned (%)
97.7
Duplicates removed (%)
3.2
Number of peaks
349 (qval < 1E-05)

hg19

Number of total reads
18665280
Reads aligned (%)
93.8
Duplicates removed (%)
2.8
Number of peaks
757 (qval < 1E-05)

Base call quality data from DBCLS SRA