Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Neural
Cell type
HRPEpiC
Tissue
epithelium
Lineage
ectoderm
Description
retinal pigment epithelial cells

Attributes by original data submitter

Sample

source_name
HRPEpiC
biomaterial_provider
ScienCell
cell
HRPEpiC
cell organism
Human
cell description
Human Retinal Pigment Epithelial Cells
cell lineage
ectoderm
cell sex
U
antibody
CTCF
antibody description
rabbit polyclonal
antibody target description
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name
Millipore
replicate
1

Sequenced DNA Library

library_name
GSM749673: Stam_HRPEpiC_CTCF_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
30762554
Reads aligned (%)
85.6
Duplicates removed (%)
11.7
Number of peaks
48460 (qval < 1E-05)

hg38

Number of total reads
30762554
Reads aligned (%)
87.4
Duplicates removed (%)
10.4
Number of peaks
48511 (qval < 1E-05)

Base call quality data from DBCLS SRA